Multi-Spectral Fluorescence Imaging System for Studying Gene Expression on ISS

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Series of 3 photos (left to right) a man next to the spectrum box, middle - a male astronaut inserting a specimen plate into the spectrum box, right - a female astronaut holding the speciman plate

Spectrum is a multi-spectral fluorescence imaging system designed for genetic research in the low- to zero-gravity environment of the International Space Station (ISS). Observation of organisms such as plants, bacteria, and fungi helps scientists further understand biological responses of these organisms in space.




Nov. 2, 2019


International Space Station


Understand the impact of the spaceflight environment on organisms in preparation for long-duration missions


Multi-Spectral Fluorescence Imaging System (Spectrum)


NASA seeks to understand the impact of the spaceflight environment on organisms in preparation for long-duration missions. Spectrum was developed to undertake these types of studies using model organisms on ISS.

Series of 3 photos (left to right) a man next to the spectrum box, middle - a male astronaut inserting a specimen plate into the spectrum box, right - a female astronaut holding the speciman plate
Left: Spectrum Engineer Dr. Scott Shipley. Center: Astronaut Chris Cassidy inserting specimen plate into Spectrum on ISS. Right: Astronaut Kate Rubins removing a specimen plate from Spectrum on ISS.

All organisms exposed to the spaceflight environment exhibit changes in the expression of many genes relative to the comparable ground controls left on Earth. The Multi-Spectral Fluorescence Imaging System (Spectrum) enables scientists to monitor these changes in real time, non-destructively, using live organisms (plants, bacteria, fungi, small invertebrates).

While the expression of some genes does not change in the space environment, some are turned on to a greater extent and others to a lesser extent. Understanding why this happens has great implications for both long-duration space missions and achieving a better understanding of the basic mechanisms at work within life on Earth. For example, some of the genes with altered responses in spaceflight trigger plant defense responses on Earth that are normally activated by pathogens and herbivores.

NASA’s Kennedy Space Center Payload Development team has developed a single-locker-sized instrument (Spectrum) that facilitates the evaluation of these phenomena (and others) in an automated fashion and requires minimal crew time.

Spectrum is a multi-spectral fluorescence imaging system designed for capturing in vivo (i.e., within a living organism) gene expression in the low- to zero-gravity environment of the International Space Station (ISS). To enable the detection of gene expression, DNA segments encoding fluorescent proteins are inserted into the organism’s genome next to the genes of interest, so that when these genes are activated, the fluorescent proteins are produced as well. The detection and monitoring of these fluorescent proteins will allow the scientific community to further understand biological responses of these organisms when subjected to space environments.

Spectrum resides within an EXpedite the PRocessing of Experiments for Space Station (EXPRESS) rack, which provides power, data, and other elements needed to run science experiments on the ISS.

To hold the biological samples that will be observed, Spectrum accommodates standard 100 mm x 100 mm Petri plates, 128 mm x 82 mm multi-well culture plates, and other custom containers within its growth and imaging chamber. Principal Investigators (PIs) can specify automated management of chamber properties and the collection of chamber environment information, including near real-time 71-megapixel images of fluorescent emission from biological organisms under highly uniform illumination. PIs can control the Spectrum chamber temperature (18-37° C), relative humidity (RH), carbon dioxide concentrations (ranging between 400 ppm up to ISS-ambient levels), and growth light characteristics. Spectrum can also remove volatile organic compounds (including ethylene down to 25 ppb) from the environment. The Spectrum software is completely controlled via ground commanding and PIs can modify the Spectrum conditions during experiments. In a typical experiment, an astronaut loads an experimental plate with the organisms to be studied into the Spectrum unit; the system runs automatically controlling temperature and changing the lights according to a desired program; and the camera takes pictures as programmed (e.g., hourly).

A schematic drawing of the spectrum components like the light array, emission filter wheel, camera, grow lights, CO2 sensor, air filtration unit, temperature sensor and heat exchanger
Schematic displaying front view of Spectrum and key components.

Researchers can image up to five genes at a time using a variety of fluorescent proteins that indicate genes of interest, and excitation light and emission filters that are easily replaceable on-orbit by the crew. Spectrum is also equipped with chlorophyll fluorescence imaging to monitor plant health during experiments.

Spectrum’s filter wheel can hold ten emission filters and rapidly switch between them. The Excitation Light Source (ELS) uses diffusers to achieve an 80% uniform illumination of the plates containing the biological samples. Additional filters are provided to support color and infrared images. This ability to switch between emission filters allows researchers to image several fluorescent proteins in a single specimen.

Four specimen plates can be mounted and rotated for sequential imaging. Chamber air is ducted through the carousel to suppress condensation on the inside of Petri plate covers. The carousel is capable of continuous rotation up to 33 rpm and is removable to allow future modification for partial gravity exposures on-orbit.

Photo on the left shows a blue light emitting out of the spectrum, photo on the right shows a green light emitting from the spectrum.
Spectrum showing blue excitation light-emitting diodes (LEDs) (left) and green excitation LEDs (right).
Illustration of the spectrum carousel on the left and the petri dish holder on the right
​Spectrum’s Carousel (left) and one of four plate holders (right) removed for insertion or replacement.

To enable growth of photosynthetic organisms, a top-mounted LED light cap is equipped with broad-spectrum white (400-750 nm), red (630-660 nm), blue (400-500 nm), and green (520-530 nm) LEDs with an intensity range of 0-1000 micromoles.

Spectrum is commanded from the ground and internally collects and stores time-stamped images with the option to downlink images and chamber environmental data for near-real time evaluation by the investigator team. To accommodate new science requirements, PIs may consider modifications to certain Spectrum components including the ELS, the Emission Filters, camera lenses, chamber sensors, carousel assemblies, and the Air Filter Cartridge. Spectrum software can also be modified during flight.

Spectrum is now available for experiments on ISS, creating a new capability for multiple types of investigations that will further NASA’s goals relating to understanding the effects of spaceflight on biological organisms.

Photo of the carousel subsystem on the left, photo of a plant specimen expressing green fluorescent protein (top) and red fluorescent protein (bottom)
ELS and Carousel Subsystems within the Spectrum Growth Chamber. Insets are images of Arabidopsis plants expressing Green Fluorescent Protein (GFP; top right) and Red Fluorescent Protein (RFP; bottom right) fluorescence. Sample courtesy of Simon Gilroy and Sarah Swanson (Univ. of Wisconsin); photographs by Scott Shipley (Kennedy Space Center).


David Flowers, NASA Kennedy Space Center


Biological and Physical Science Division‘s Space Biology Program

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